species:   Rhsol
pid:       PID0494
parent:    Rhi-milR-11
paralog:   
locus:     KB317826.1:16515-16597
matures:   ['ACCAUGGACUGGUCUAGACGGG', 'GUCUAGCCUCGGUUCACUUC']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317826.1:16515-16597

8 out of bounds
3 alignments
1 proper strand
1 stranded perfect matches

          **********************                 ************************          
AUCUCUCUGACUGUCUAGCCUCGGUUCACUUCGCUCUGAGCGCAAUUCCGAACCAUGGACUGGUCUAGACGGGUCACUUCAUG
.......(((((((((((.(.(((((((.((((...((....))....))))...)))))))).)))))).))))).......
---------------------------------------------------ACCAUGGACUGGUCUAGACGGG---------- l=22 a=1 c
------------GUCUAGCCUCGGUUCACUUC--------------------------------------------------- l=20 a=0 c*
---------------------------------------------------ACCAUGGACUGGUCUAGACGGG---------- l=22 a=1 ma
------------GUCUAGCCUCGGUUCACUUC--------------------------------------------------- l=20 a=0 ma*

---------------------------------------------------ACCAUGGACUGGUCUAGACGGG---------- l=22 a=1 (c,ma)

mb-01011
ax-1011011
ku-01
ss-110110011100
fn-001
